We are trying to fully containerize Rstudio however we run the image we get the following error. Is there something we are missing here? Ref: Jun 03 08:09:53 pdlhpc1cn001 rserver[13797]: ERROR Could not change permissions for specified ‘server-data-dir’ - the directory (/var/run/rstudio-server) mus…

I would say next steps are answering these two questions. Can the job find the $RSTUDIO_AUTH in the container (if you’re not mounting home as an example)? Then is the $RSTUDIO_AUTH working as it’s expected? can it find the $RSTUDIO_AUTH file. To debug this, I’d write a simple wrapper like this. T…

@charles8ronson Can you share the script.sh.erb that launches RStudio?

We figured out that we needed to mount /tmp to /var/run in the container but now it’s not adhering to the authorization portion of the script: # Load the required environment setup_env () { # Additional environment which could be moved into a module # Change these to suit export RSTUDIO_SER…

Hello, that was not the solution. It was part of the solution. Authorization is still not functioning. I get to the login and the username/password aren’t getting validated to allow me to log in.when I type them in manually, it also doesn’t work. This is following the button Connect to RStudio Serv…

This is where it fails after I launch it. [image] I can’t add new posts to this topic so I’m editing this post: I mounted /home I updated the template/bin/auth to include the changes for rstudio server 1.3 support still failing at authorization phase. I installed within the container: R-4.0.0…

I’d ensure that HOME is mounted too. You seem to be passing credentials OK, but can the container find this file `--auth-pam-helper-path "{RSTUDIO_AUTH}"` (It ends up being ~/ondemand/data/sys/dashboard/batch_connect/sys/rstudio/output//bin/auth)?

What version of RStudio Server are you using? We noticed that the new 1.3 version fails to authenticate with “Error: Incorrect or invalid username/password”. We just didn’t get around to posting the issue yet.

Hi, The authentication issue in 1.3 is due to a change in how the auth-pam-helper script is invoked by rserver. Previously, it was called with just one argument, $USERNAME. In 1.3 it is called with three arguments, “$USERNAME rstudio 1”. The test in line 4 of the bin/auth script: #!/usr/bin/env b…

@dugan Thanks for this! I opened an issue to get this merged into bc_osc_rstudio_server here https://github.com/OSC/bc_osc_rstudio_server/issues/34

Onbehalf of eisenfaust (can only do 3 posts atm): I mounted /home I updated the template/bin/auth to include the changes for rstudio server 1.3 support still failing at authorization phase. I installed within the container: R-4.0.0.tar.gz to /R/4.0.0 rstudio-server-rhel-1.3.959-x86_64.rpm to d…

Unable to launch fully containerized Rstudio

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alanc (Alan Chalker) June 3, 2020, 4:12pm 4

Have you looked at any of the other threads on here about Rstudio? A lot of people have been able to get it working, but there always seem to be certain containerization or authentication issues that crop up. Most of the threads have solutions posted. For example:

Topic		Replies	Views
Osc_bc_rstudio_server streamlined submit.yml.erb Get Help question	29	1156	December 18, 2022
RStudio when launched without Singularity is having strange troubles with authentication Get Help question	59	9078	June 22, 2022
Looking for some debugging tips re: rstudio app on el8 Get Help	10	2750	May 26, 2022
RStudio server 4.3.2 with Rocker Singularity Get Help	23	736	September 25, 2024
RStudio Server Issues Get Help question	13	1951	November 23, 2022

Unable to launch fully containerized Rstudio

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