Hello, I am able to setup a Desktop environment with XFCE, however starting an application with session manager fails with glibc errors. Any pointers would be helpful. Thanks
Setting VNC password...
Starting VNC server...
Desktop 'TurboVNC: host.xyz:1 (john)' started on display host.xyz:1
Log file is vnc.log
Successfully started VNC server on host.xyz:5901...
Script starting...
Starting websocket server...
/usr/lib/python3.6/site-packages/websockify/websocket.py:31: UserWarning: no 'numpy' module, HyBi protocol will be slower
warnings.warn("no 'numpy' module, HyBi protocol will be slower")
WebSocket server settings:
- Listen on :7120
- No SSL/TLS support (no cert file)
- Backgrounding (daemon)
Scanning VNC log file for user authentications...
Generating connection YAML file...
+ /hps/software/opt/linux-rocky8-cascadelake/igv/IGV_Linux_2.16.2/igv.sh
echo Using bundled JDK.
The system default contains no modules
(env var: LMOD_SYSTEM_DEFAULT_MODULES is empty)
No changes in loaded modules
++ dbus-launch --sh-syntax
+ eval 'DBUS_SESSION_BUS_ADDRESS='\''unix:abstract=/tmp/dbus-jOY1mjG3yR,guid=ee66fd9294828ec2c7d70c7664f09638'\'';' export 'DBUS_SESSION_BUS_ADDRESS;' 'DBUS_SESSION_BUS_PID=3820906;' 'DBUS_SESSION_BUS_WINDOWID=2097153;'
++ DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-jOY1mjG3yR,guid=ee66fd9294828ec2c7d70c7664f09638
++ export DBUS_SESSION_BUS_ADDRESS
++ DBUS_SESSION_BUS_PID=3820906
++ DBUS_SESSION_BUS_WINDOWID=2097153
+ xsetroot -solid '#D3D3D3'
+ xfwm4 --compositor=off --sm-client-disable
+ xfce4-panel --sm-client-disable
+ xfsettingsd --sm-client-disable
WARNING: package com.sun.java.swing.plaf.windows not in java.desktop
WARNING: package sun.awt.windows not in java.desktop
openjdk version "11.0.13" 2021-10-19
OpenJDK Runtime Environment Temurin-11.0.13+8 (build 11.0.13+8)
OpenJDK 64-Bit Server VM Temurin-11.0.13+8 (build 11.0.13+8, mixed mode)
xfce4-settings(xsettings): _XSETTINGS_S0 registered on screen 0
xfce4-settings(xsettings): 31 settings changed (serial=0, len=1216)
xfce4-settings(xsettings): resource manager (xft) changed (len=111)
xfce4-settings(displays): Detected CRTC 63.
xfce4-settings(displays): Detected output 64 VNC-0.
(xfwm4:3820907): GLib-CRITICAL **: 14:31:36.515: g_str_has_prefix: assertion 'prefix != NULL' failed
xfce4-settings(pointers): initialized xi 2.3
xfce4-settings(keyboards): initialized xkb 1.0
xfce4-settings(keyboards): set auto repeat on
xfce4-settings(keyboards): set key repeat (delay=500, rate=50)
xfce4-settings(keyboards): don't set numlock
xfce4-settings(accessibility): AccessXKeys disabled
xfce4-settings(accessibility): stickykeys disabled
xfce4-settings(accessibility): slowkeys disabled
xfce4-settings(accessibility): bouncekeys disabled
xfce4-settings(accessibility): mousekeys disabled
(xfsettingsd:3820909): GLib-CRITICAL **: 14:31:36.533: g_str_has_prefix: assertion 'prefix != NULL' failed
(xfsettingsd:3820909): GLib-GObject-CRITICAL **: 14:31:36.540: g_value_get_string: assertion 'G_VALUE_HOLDS_STRING (value)' failed
(xfsettingsd:3820909): GLib-GObject-CRITICAL **: 14:31:36.540: g_value_get_string: assertion 'G_VALUE_HOLDS_STRING (value)' failed
(xfsettingsd:3820909): GLib-GObject-CRITICAL **: 14:31:36.544: g_value_get_string: assertion 'G_VALUE_HOLDS_STRING (value)' failed
xfce4-settings(keyboard-shortcuts): 29 shortcuts loaded
xfce4-settings(workspaces): extended names in xfconf, waiting for property-change
xfce4-settings(workspaces): number of desktops changed
xfce4-settings(fontconfig): monitoring 47 paths
xfce4-settings(workspaces): 4 desktop names set from xfconf
INFO [Aug 31,2023 14:31] [Globals] Development mode is enabled
INFO [Aug 31,2023 14:31] [Main] Startup IGV Version 2.16.2 07/14/2023 12:24 AM
INFO [Aug 31,2023 14:31] [Main] Java 11.0.13 (build 11.0.13+8) 2021-10-19
INFO [Aug 31,2023 14:31] [Main] Java Vendor: Eclipse Adoptium https://adoptium.net/
INFO [Aug 31,2023 14:31] [Main] JVM: OpenJDK 64-Bit Server VM Temurin-11.0.13+8
INFO [Aug 31,2023 14:31] [Main] OS: Linux 4.18.0-348.20.1.el8_5.x86_64 amd64
INFO [Aug 31,2023 14:31] [Main] IGV Directory: /homes/john/igv
INFO [Aug 31,2023 14:31] [Main] Resoluction scale = 0.0
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
INFO [Aug 31,2023 14:31] [CommandListener] Listening on port 60151
INFO [Aug 31,2023 14:31] [GenomeManager] Loading genome: https://s3.amazonaws.com/igv.org.genomes/hg19/hg19.json
INFO [Aug 31,2023 14:31] [TrackLoader] Loading resource: https://hgdownload.soe.ucsc.edu/goldenPath/hg19/database/ncbiRefSeq.txt.gz
INFO [Aug 31,2023 14:31] [ShutdownThread] Shutting down
Cleaning up...
Killing Xvnc process ID 3820810
Gdk-Message: 14:31:44.090: xfwm4: Fatal IO error 11 (Resource temporarily unavailable) on X server :1.
Gdk-Message: 14:31:44.091: xfsettingsd: Fatal IO error 11 (Resource temporarily unavailable) on X server :1.
Gdk-Message: 14:31:44.098: xfce4-panel: Fatal IO error 11 (Resource temporarily unavailable) on X server :1.