Running GUI application with xfce session manager (glibc errors)

Hello, I am able to setup a Desktop environment with XFCE, however starting an application with session manager fails with glibc errors. Any pointers would be helpful. Thanks

Setting VNC password...
Starting VNC server...

Desktop 'TurboVNC: (john)' started on display

Log file is vnc.log
Successfully started VNC server on
Script starting...
Starting websocket server...
/usr/lib/python3.6/site-packages/websockify/ UserWarning: no 'numpy' module, HyBi protocol will be slower
  warnings.warn("no 'numpy' module, HyBi protocol will be slower")
WebSocket server settings:
  - Listen on :7120
  - No SSL/TLS support (no cert file)
  - Backgrounding (daemon)
Scanning VNC log file for user authentications...
Generating connection YAML file...
+ /hps/software/opt/linux-rocky8-cascadelake/igv/IGV_Linux_2.16.2/
echo Using bundled JDK.
The system default contains no modules
  (env var: LMOD_SYSTEM_DEFAULT_MODULES is empty)
  No changes in loaded modules

++ dbus-launch --sh-syntax
+ eval 'DBUS_SESSION_BUS_ADDRESS='\''unix:abstract=/tmp/dbus-jOY1mjG3yR,guid=ee66fd9294828ec2c7d70c7664f09638'\'';' export 'DBUS_SESSION_BUS_ADDRESS;' 'DBUS_SESSION_BUS_PID=3820906;' 'DBUS_SESSION_BUS_WINDOWID=2097153;'
++ DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-jOY1mjG3yR,guid=ee66fd9294828ec2c7d70c7664f09638
+ xsetroot -solid '#D3D3D3'
+ xfwm4 --compositor=off --sm-client-disable
+ xfce4-panel --sm-client-disable
+ xfsettingsd --sm-client-disable
WARNING: package not in java.desktop
WARNING: package not in java.desktop
openjdk version "11.0.13" 2021-10-19
OpenJDK Runtime Environment Temurin-11.0.13+8 (build 11.0.13+8)
OpenJDK 64-Bit Server VM Temurin-11.0.13+8 (build 11.0.13+8, mixed mode)
xfce4-settings(xsettings): _XSETTINGS_S0 registered on screen 0
xfce4-settings(xsettings): 31 settings changed (serial=0, len=1216)
xfce4-settings(xsettings): resource manager (xft) changed (len=111)
xfce4-settings(displays): Detected CRTC 63.
xfce4-settings(displays): Detected output 64 VNC-0.

(xfwm4:3820907): GLib-CRITICAL **: 14:31:36.515: g_str_has_prefix: assertion 'prefix != NULL' failed
xfce4-settings(pointers): initialized xi 2.3
xfce4-settings(keyboards): initialized xkb 1.0
xfce4-settings(keyboards): set auto repeat on
xfce4-settings(keyboards): set key repeat (delay=500, rate=50)
xfce4-settings(keyboards): don't set numlock
xfce4-settings(accessibility): AccessXKeys disabled
xfce4-settings(accessibility): stickykeys disabled
xfce4-settings(accessibility): slowkeys disabled
xfce4-settings(accessibility): bouncekeys disabled
xfce4-settings(accessibility): mousekeys disabled

(xfsettingsd:3820909): GLib-CRITICAL **: 14:31:36.533: g_str_has_prefix: assertion 'prefix != NULL' failed

(xfsettingsd:3820909): GLib-GObject-CRITICAL **: 14:31:36.540: g_value_get_string: assertion 'G_VALUE_HOLDS_STRING (value)' failed

(xfsettingsd:3820909): GLib-GObject-CRITICAL **: 14:31:36.540: g_value_get_string: assertion 'G_VALUE_HOLDS_STRING (value)' failed

(xfsettingsd:3820909): GLib-GObject-CRITICAL **: 14:31:36.544: g_value_get_string: assertion 'G_VALUE_HOLDS_STRING (value)' failed
xfce4-settings(keyboard-shortcuts): 29 shortcuts loaded
xfce4-settings(workspaces): extended names in xfconf, waiting for property-change
xfce4-settings(workspaces): number of desktops changed
xfce4-settings(fontconfig): monitoring 47 paths
xfce4-settings(workspaces): 4 desktop names set from xfconf
INFO [Aug 31,2023 14:31] [Globals] Development mode is enabled
INFO [Aug 31,2023 14:31] [Main] Startup  IGV Version 2.16.2 07/14/2023 12:24 AM
INFO [Aug 31,2023 14:31] [Main] Java 11.0.13 (build 11.0.13+8) 2021-10-19
INFO [Aug 31,2023 14:31] [Main] Java Vendor: Eclipse Adoptium
INFO [Aug 31,2023 14:31] [Main] JVM: OpenJDK 64-Bit Server VM Temurin-11.0.13+8   
INFO [Aug 31,2023 14:31] [Main] OS: Linux 4.18.0-348.20.1.el8_5.x86_64 amd64
INFO [Aug 31,2023 14:31] [Main] IGV Directory: /homes/john/igv
INFO [Aug 31,2023 14:31] [Main] Resoluction scale = 0.0
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See for further details.
INFO [Aug 31,2023 14:31] [CommandListener] Listening on port 60151
INFO [Aug 31,2023 14:31] [GenomeManager] Loading genome:
INFO [Aug 31,2023 14:31] [TrackLoader] Loading resource:
INFO [Aug 31,2023 14:31] [ShutdownThread] Shutting down
Cleaning up...
Killing Xvnc process ID 3820810
Gdk-Message: 14:31:44.090: xfwm4: Fatal IO error 11 (Resource temporarily unavailable) on X server :1.

Gdk-Message: 14:31:44.091: xfsettingsd: Fatal IO error 11 (Resource temporarily unavailable) on X server :1.

Gdk-Message: 14:31:44.098: xfce4-panel: Fatal IO error 11 (Resource temporarily unavailable) on X server :1.

Hey, sorry we didn’t see this earlier. I think this is the relevant portion of the output log. The app you’re booting (IVG?) isn’t booting or at least shut itself down. Not really sure why (the SLF4J error seems to have corrected itself).

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