Hello,
I am trying to bring up this app.
But the job is stuck at starting.
When i check the logs in scheduler . I see this:
<< output from stdout >>
Setting VNC password…
Starting VNC server…
Desktop ‘TurboVNC: je17:1 (vallerul)’ started on display je17:1
Log file is vnc.log
Successfully started VNC server on je17:5901…
Script starting…
Starting websocket server…
- singularity exec -B /var:/var /opt/common/ondemand/igv/xfce-ood-desktop_latest.sif xfwm4 --compositor=off --daemon --sm-client-disable
Currently Loaded Modulefiles:- singularity/3.6.0 2) igv/2.12.1
- igv
echo Using bundled JDK.
WebSocket server settings:- Listen on :5018
- Flash security policy server
- No SSL/TLS support (no cert file)
- Backgrounding (daemon)
Scanning VNC log file for user authentications…
/scratch/lsftmp/1644535625.14952649.shell: line 198: syntax error near unexpected token(' /scratch/lsftmp/1644535625.14952649.shell: line 198:
done << (tail -f --pid=${SCRIPT_PID} “vnc.log”) &’
WARNING: package com.sun.java.swing.plaf.windows not in java.desktop
WARNING: package sun.awt.windows not in java.desktop
openjdk version “11.0.13” 2021-10-19
OpenJDK Runtime Environment Temurin-11.0.13+8 (build 11.0.13+8)
OpenJDK 64-Bit Server VM Temurin-11.0.13+8 (build 11.0.13+8, mixed mode)
INFO [Feb 10,2022 18:27] [Globals] Development mode is enabled
INFO [Feb 10,2022 18:27] [Main] Startup IGV Version 2.12.1 02/09/2022 05:27 PM
INFO [Feb 10,2022 18:27] [Main] Java 11.0.13 (build 11.0.13+8) 2021-10-19
INFO [Feb 10,2022 18:27] [Main] Java Vendor: Eclipse Adoptium https://adoptium.net/
INFO [Feb 10,2022 18:27] [Main] JVM: OpenJDK 64-Bit Server VM Temurin-11.0.13+8
INFO [Feb 10,2022 18:27] [Main] OS: Linux 3.10.0-1160.45.1.el7.x86_64 amd64
INFO [Feb 10,2022 18:27] [Main] IGV Directory: /sysadmin/home/vallerul/igv
INFO [Feb 10,2022 18:27] [GenomeManager] Loading genome: https://s3.amazonaws.com/igv.org.genomes/hg19/hg19.json
INFO [Feb 10,2022 18:27] [TrackLoader] Loading resource: https://s3.amazonaws.com/igv.org.genomes/hg19/ncbiRefSeq.sorted.txt.gz
(xfwm4:76768): GLib-CRITICAL **: 18:27:41.604: g_str_has_prefix: assertion ‘prefix != NULL’ failed
(xfwm4:76768): xfwm4-WARNING **: 18:27:43.846: The property ‘/general/double_click_distance’ of type int is not supported
I see syntax errors for vnc.log, and i am not sure why the app is not working.
May i know if i could get help to fix this?
Regards,
Lohit